Escherichia coli
- Tandem Repeat Analysis
Protocol
Experimental procedure
The file e_coli.fasta corresponds to the frozen data (June 4, 2004
http://www.ncbi.nlm.nih.gov GB U00096
) of
Escherichia coli
genome.
Genome sequence FASTA file
Genome complexity - 4,639,675 bp
The file was submitted to Tandem Repeats Finder (TRF) (
Benson, 1999
) program using the following parameters:
2 5 7 80 10 25 1000.
TRF output files were analyzed by the Tandem Repeat Analysis Program (TRAP) using the following parameters:
Minimum period size of repeats - 1
Maximum period size of repeats - 6
Minimum identity percentage - 100
Create HTML and CSV files - yes
Create TRF-like HTML files - yes
Sorting - according to the total number of bases
Create feature table files - yes
Create redundancy report file - yes